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csdplotter  (MathWorks Inc)
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MathWorks Inc csdplotter
Csdplotter, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gui toolbox csdplotter-0.1.1  (MathWorks Inc)
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MathWorks Inc gui toolbox csdplotter-0.1.1
Gui Toolbox Csdplotter 0.1.1, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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csdplotter – spline icsd method  (MathWorks Inc)
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MathWorks Inc csdplotter – spline icsd method
Csdplotter – Spline Icsd Method, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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spline icsd method  (MathWorks Inc)
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MathWorks Inc spline icsd method
Spline Icsd Method, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab toolbox csdplotter  (MathWorks Inc)
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MathWorks Inc matlab toolbox csdplotter
Matlab Toolbox Csdplotter, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tcsd estimation methods  (MathWorks Inc)
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MathWorks Inc tcsd estimation methods
Comparison of ground-truth CSD and CSD estimates from model LFPs. <t>The</t> <t>tCSD</t> and <t>iCSD</t> methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.
Tcsd Estimation Methods, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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fmatoolbox  (MathWorks Inc)
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MathWorks Inc fmatoolbox
Comparison of ground-truth CSD and CSD estimates from model LFPs. <t>The</t> <t>tCSD</t> and <t>iCSD</t> methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.
Fmatoolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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icsd toolbox  (MathWorks Inc)
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MathWorks Inc icsd toolbox
Comparison of ground-truth CSD and CSD estimates from model LFPs. <t>The</t> <t>tCSD</t> and <t>iCSD</t> methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.
Icsd Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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u-probe  (INCF)
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INCF u-probe
Comparison of ground-truth CSD and CSD estimates from model LFPs. <t>The</t> <t>tCSD</t> and <t>iCSD</t> methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.
U Probe, supplied by INCF, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab 2014b software  (MathWorks Inc)
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MathWorks Inc matlab 2014b software
Comparison of ground-truth CSD and CSD estimates from model LFPs. <t>The</t> <t>tCSD</t> and <t>iCSD</t> methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.
Matlab 2014b Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Comparison of ground-truth CSD and CSD estimates from model LFPs. The tCSD and iCSD methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.

Journal: The Journal of Neuroscience

Article Title: Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection

doi: 10.1523/JNEUROSCI.2715-16.2017

Figure Lengend Snippet: Comparison of ground-truth CSD and CSD estimates from model LFPs. The tCSD and iCSD methods were applied to model LFPs corresponding to an RS-cell population. The LFPs resulted from a synapse distribution within a cylinder with r syn = h syn = 200 μm, and zero offset μ z . Synapses were activated at t = 0 ms, and other parameters were similar to the default parameters . The projection resulted in 666 postsynaptic neurons and 1758 dendritic synapses. A , Illustration of the postsynaptic RS-cell population and synapse positions. The scatter plots show the synaptic distributions projected in the xz and xy planes, respectively, with corresponding histograms of synaptic locations. Gray dots denote somas of neurons without synapses; black dots denote postsynaptic neurons; red dots denote the synapse locations. The histograms show the spatial distribution of synapse locations along the x -axis and z -axis, respectively. The single tick label denotes the maximum synapse count within 10 μm bins along the depicted axes. B , LFP response from TC input. C , Ground-truth CSD, filtered. Spatial resolution corresponded to the LFP recording, i.e., h z = 100 μm. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. D , Ground-truth CSDs calculated with increased spatial resolution ( h z = 20 μm), filtered. The ground-truth CSDs correspond to a radius r Ω k = r syn = 200 μm. E , Deviations between ground-truth CSD ( C and D ) and δ-iCSD and spline-iCSD estimates as a function of source radius r CSD . The least-square error measure LS is defined in , and values are normalized such that the global minimum is 1 (occurring for the value of r CSD giving the best fit). Also shown is the correlation coefficient, i.e., Pearson product–moment correlation coefficient, cc , between ground-truth CSD and the iCSD estimates. F , Standard CSD estimate from model LFP in B . G , δ-iCSD method estimate based on model LFP in B , r CSD = 100 μm. H , Spline-iCSD method estimate based on model LFP in B , r CSD = 100 μm. I–L , δ-iCSD estimates for a set of different values for r CSD , i.e., 50, 200, 500 and 10 9 μm, respectively. The number and scale bar inside B–D and F–L describe the amplitude of the line plots. The number also gives the LFP or CSD values corresponding to ±1 of the color bar.

Article Snippet: The implementations of the tCSD and iCSD estimation methods were ported from the Matlab toolbox CSDplotter ( ) to Python.

Techniques: Comparison